PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP030450.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 550aa MW: 61610.4 Da PI: 6.3599

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP030450.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127	8.9e-40	24	123	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkCakdC+lap+fp +qpk f+n+h+l+G++n++k+lk++++e+re+am+s++ye++++a+ Pv G++g+i++l+ ql+q+++el +++ PCP030450.1 24 ACAACKYQRRKCAKDCALAPHFPPDQPKLFQNAHRLYGVANIMKILKQVHPEKREEAMRSIIYESNMCAKFPVTGCMGIINQLTFQLQQAQEELRYVR 121 7*********************************************************************************************9998 PP DUF260 99 ee 100 ++ PCP030450.1 122 TH 123 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MIAKKVDECT FYPTMTIKGG TSQACAACKY QRRKCAKDCA LAPHFPPDQP KLFQNAHRLY 60 GVANIMKILK QVHPEKREEA MRSIIYESNM CAKFPVTGCM GIINQLTFQL QQAQEELRYV 120 RTHLAICKDQ CQYRMPTSPQ HYSCPSSQLQ LGIPTNTDAA ALTLYQQHQY PYQYASGGSG 180 GMPWVANEYL ANGLNGVYID ENDNMVKPLR VQHPYYNDNN VEQLMAIQSN LVPSQAFPIH 240 QEMDVPHDYD DIPFDTIADD RQSYIESKEA CESSAESSFK GTQSIEHVSQ NDLKSAAACF 300 SLTKSVKIEN LLGMLTVKLQ DDNFVKWHFQ FQSVLRGYDL LDFFTGDNPC PPKYVIHTET 360 KHVIGCKTSQ EAWSALQDRF ASVSVSRINQ LKTEFHTAQK GWDSIDKFLL KLKAIRDQLI 420 FAGERVFEND LVIAVLTGLS QEFDMIRTVI LARETPISLK DFHAQLLSAE LTIESRVTAL 480 TGSMSAMYMN GDNGNGHTGS YQANGSYQGE SSTMGANGYQ GGESSNVGEN GYQGGFCFTG 540 SNQRHFNTQN

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MIAKKVDECT FYPTMTIKGG TSQACAACKY QRRKCAKDCA LAPHFPPDQP KLFQNAHRLY  60
GVANIMKILK QVHPEKREEA MRSIIYESNM CAKFPVTGCM GIINQLTFQL QQAQEELRYV  120
RTHLAICKDQ CQYRMPTSPQ HYSCPSSQLQ LGIPTNTDAA ALTLYQQHQY PYQYASGGSG  180
GMPWVANEYL ANGLNGVYID ENDNMVKPLR VQHPYYNDNN VEQLMAIQSN LVPSQAFPIH  240
QEMDVPHDYD DIPFDTIADD RQSYIESKEA CESSAESSFK GTQSIEHVSQ NDLKSAAACF  300
SLTKSVKIEN LLGMLTVKLQ DDNFVKWHFQ FQSVLRGYDL LDFFTGDNPC PPKYVIHTET  360
KHVIGCKTSQ EAWSALQDRF ASVSVSRINQ LKTEFHTAQK GWDSIDKFLL KLKAIRDQLI  420
FAGERVFEND LVIAVLTGLS QEFDMIRTVI LARETPISLK DFHAQLLSAE LTIESRVTAL  480
TGSMSAMYMN GDNGNGHTGS YQANGSYQGE SSTMGANGYQ GGESSNVGEN GYQGGFCFTG  540
SNQRHFNTQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-42	LBD family protein