PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP030521.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 329aa MW: 36488.8 Da PI: 6.4988

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP030521.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.7e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+++++ g+ R++k+c++rw +yl PCP030521.1 14 RGLWSPEEDEKLINCITTYGHGCWSSVPKLAGLQRCGKSCRLRWTNYL 61 788*******************************************97 PP
2	Myb_DNA-binding	48.2	2.5e-15	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ PCP030521.1 67 RGSFSPQEAALIIELHSILGNK-WAQIAKHLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLINCIT TYGHGCWSSV PKLAGLQRCG KSCRLRWTNY 60 LRPDLKRGSF SPQEAALIIE LHSILGNKWA QIAKHLPGRT DNEVKNFWNS SIKKKLIPHE 120 VNPAFASFSS NHIHNSRGHG SEEGFFTLNT NPNLGSQPQD QLYLPIVPPM PSLGLDDHGD 180 FNNILKLDQT SYASNFVDHF LPPFQLPSNN SSSCESSSWS LGYQPHYQYD PNVQNFSINE 240 AAAAQYNNGG NELMVPISMA SSAPAAYENP SNIPTMPQFC EIIDSNACGM PIPYPSDAQE 300 LDSLAKLSCF TSGHGSHPQD LQFPSNQLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	2e-78	MYB family protein