PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP030535.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 318aa MW: 36048.2 Da PI: 6.5894

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP030535.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123	1.5e-38	34	133	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn+ k++k+l++ +++dam+++++++++ra+dPv G++++i +lq+ +e kael+ + PCP030535.1 34 ACAACKYQRRKCASDCILAPYFPHDRQRQFLNAHKLFGVSNIKKIIKHLDQPDKDDAMRTIIFQSDVRANDPVGGCYRIICELQRLIEYNKAELDIVL 131 7*********************************************************************************************9887 PP DUF260 99 ee 100 ++ PCP030535.1 132 HQ 133 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MSSSSHSHKH THHISTTTTK TPPTKGNANA NTQACAACKY QRRKCASDCI LAPYFPHDRQ 60 RQFLNAHKLF GVSNIKKIIK HLDQPDKDDA MRTIIFQSDV RANDPVGGCY RIICELQRLI 120 EYNKAELDIV LHQLAICRAQ AQEVYQQQHQ NPIQMPEIGD QNACDPSIKV DPWSLYGNPM 180 GHFYYIQQPQ PPHHAVALQQ EQPQQQQQQR VPYVFVQNNT NSNNNSDSTN GDPHPYPHQH 240 LYEDLSMWAM QDSVSCLDIK QCGGGMNGIT NVCEDLKPFV DQIACGDDHE RNNGEVIDIN 300 GDHQQRLLVT NTELLMSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-46	LBD family protein