PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP030655.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 566aa MW: 61673.4 Da PI: 8.2081

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP030655.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.7e-12	301	347	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L llP + kK++Ka++L A++Y+k+Lq PCP030655.1 301 DHVLAERKRREKLSQRFIALSALLPGL-----KKMDKASVLGDAIKYVKHLQ 347 58899********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence
MQPASGCRPQ AEGNGYAQQP RLLVLRQMGQ DQIPASAKAC WQVGPSCRWA RGFRPVEINP 60 KLKPSCRVQE HHRLDVERVR IPIKDYNCKT LPSWRTGKTR TWIVFTGRKL NPTLLLITIH 120 SKERNQEMED PTFINQHEMS SLDYSLDELI FSSFSSESYS SYPNFTSKTA AATHNFSKAF 180 VENPHQTDTQ ERPAKQPKNT TSWKSCFTDN IIAAKASPSS SSHLISFENS DSSLPTTSQQ 240 YYGPDCKVFK PKNEVEYSNG KLKLPALISQ GSYDTQSCSP KHGQGIKRAA TVTRSPLHAQ 300 DHVLAERKRR EKLSQRFIAL SALLPGLKKM DKASVLGDAI KYVKHLQERT KVLEEQAAKK 360 TGEAVVFVKR MQYSADDDIS SSDENSESCS DQPLPEIEAR VWDKEVLIRI HCEKTNGCLT 420 RILSEIEKLG LTIVHSCALP FGNSTLDITV VAQMDVEFSM TVKDLVEPKP EPHGRPPNMF 480 FCVSFGKSLL PIVQLRAMSM QRDDGRGGGS SSSCGASGGS CGCSSSGGGG SGDNDGDSSS 540 DDCGGSGGGG GGGGVGNNGV GNGVVV

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence

MQPASGCRPQ AEGNGYAQQP RLLVLRQMGQ DQIPASAKAC WQVGPSCRWA RGFRPVEINP  60
KLKPSCRVQE HHRLDVERVR IPIKDYNCKT LPSWRTGKTR TWIVFTGRKL NPTLLLITIH  120
SKERNQEMED PTFINQHEMS SLDYSLDELI FSSFSSESYS SYPNFTSKTA AATHNFSKAF  180
VENPHQTDTQ ERPAKQPKNT TSWKSCFTDN IIAAKASPSS SSHLISFENS DSSLPTTSQQ  240
YYGPDCKVFK PKNEVEYSNG KLKLPALISQ GSYDTQSCSP KHGQGIKRAA TVTRSPLHAQ  300
DHVLAERKRR EKLSQRFIAL SALLPGLKKM DKASVLGDAI KYVKHLQERT KVLEEQAAKK  360
TGEAVVFVKR MQYSADDDIS SSDENSESCS DQPLPEIEAR VWDKEVLIRI HCEKTNGCLT  420
RILSEIEKLG LTIVHSCALP FGNSTLDITV VAQMDVEFSM TVKDLVEPKP EPHGRPPNMF  480
FCVSFGKSLL PIVQLRAMSM QRDDGRGGGS SSSCGASGGS CGCSSSGGGG SGDNDGDSSS  540
DDCGGSGGGG GGGGVGNNGV GNGVVV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	306	311	ERKRRE
2	307	312	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22750.2	2e-52	bHLH family protein