PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP030669.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 824aa    MW: 89515.1 Da    PI: 6.3018
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP030669.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.63.2e-21119174156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++eLe+lF+++++p++++r eL+++l+L++rqVk+WFqNrR+++k
  PCP030669.1 119 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLNLETRQVKFWFQNRRTQMK 174
                  688999***********************************************999 PP
2START208.82.1e-653265491205
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ela++a++elvk+a+ +ep+W +s     e +n +e++++f++  +     + +ea+r+sg+v+ ++ +lve+l+d++ +W e+++    + +t++vi
  PCP030669.1 326 ELALAAMDELVKMAQTDEPLWLRSLeggrEVLNHEEYMRSFTPCIGlkpngFVSEASRESGMVIINSLTLVETLMDSN-RWLEMFPgviaRTSTTDVI 422
                  5899************************99***********999989***9***************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  ssg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvSvd+ ++ ++ + ++ +++lpSg+++++++ng+s+vtwveh+++++++
  PCP030669.1 423 SSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDVIRDTSSAPTFMNCRRLPSGCVVQDMPNGYSRVTWVEHAEYDESQ 520
                  **********************************************************99************************************** PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqce 205
                  +h+l+r+l++sg+ +ga++wvatlqrq e
  PCP030669.1 521 VHQLYRPLLSSGMGFGAQRWVATLQRQSE 549
                  **************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    
MSFGGFLDNS TGSCGGTRIV ADIPYTNSNN NMPSSAIAQP NLVTQSFTKS MFNSPGLSLA  60
LQTNVDGQGD VTRVAESYEA NNGGRRSREE EHESRSGSDN MDGASGDDQD AADNNPRKKK  120
RYHRHTPQQI QELEALFKEC PHPDEKQRLE LSRRLNLETR QVKFWFQNRR TQMKTQLERH  180
ENSLLRQEND KLRAENMSIR DAMRNPICSN CGGPAIIGDI SLDEQHLRIE NARLKDELDR  240
VCALAGKFLG RPISSLATSM GPPLPSSTLE LGVGSNGFGG MSNVATSISM GPDFGGGIGS  300
AMSIVSHGRP SVTGLDRSIE RSMFLELALA AMDELVKMAQ TDEPLWLRSL EGGREVLNHE  360
EYMRSFTPCI GLKPNGFVSE ASRESGMVII NSLTLVETLM DSNRWLEMFP GVIARTSTTD  420
VISSGMGGTR NGALQLMHAE LQVLSPLVPV REVNFLRFCK QHAEGVWAVV DVSVDVIRDT  480
SSAPTFMNCR RLPSGCVVQD MPNGYSRVTW VEHAEYDESQ VHQLYRPLLS SGMGFGAQRW  540
VATLQRQSEC QAILMSSSVP SRDHTAITTS GRRSMLKLAQ RMTDNFCAGV CASTVHKWTK  600
LNAGNVDEDV RVMTRESLDD PGEPPGVVLS AATSVWLPVS PQRLFDFLRD ERLRSEWDIL  660
SNGGPMQEMA HIAKGQDPGN CVSLLRARAN ANQGSMLILQ ETRIDAAGSL VVYAPVDIPA  720
MHVVMNGGDS AYVALLPSGF AIVPDGPGSR GPMSGKGTTH GSSNGGGCGD GGGNRVSGSL  780
LTMTFQILVN SLPAGKLTVE SVETVNHLIS CTVQKIKASL HCES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0HD-ZIP family protein