PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP030807.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 247aa    MW: 27943.7 Da    PI: 9.4596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP030807.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005395117223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +C+ C++ ++++ +L  H +  H
  PCP030807.1  95 SCSVCSRAYPTSRLLSIHVSEaH 117
                  6*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MASMDVEEAQ LGFPHWKPLR RKFAPESPFF ASGNIERELL AKQIALDLTE DEKHQLREMV  60
DGEGRGCFCP IVGCGARLSS LEDFEDHYNA RHTASCSVCS RAYPTSRLLS IHVSEAHDSF  120
FQAKVSRGYL MYECLVEGCG LKFKNYKSRQ QHLVDKHKFP TSFEFFKKAF PSKKQRQKNQ  180
RRQATSKKAE SSSMQVDNET MDGLVSGVSK LSTSDSSPSA ISFGRRPTRG MTFVPRAVQR  240
EKKPDST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173179KKQRQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-115C2H2 family protein