PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP030812.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 239aa MW: 27077.6 Da PI: 9.3541

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP030812.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.3	6.5e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i +k++rqvtfskRr g++KKA ELSvLC +ev ++ifs +g+lye++s PCP030812.1 9 KPIADKIRRQVTFSKRRSGLIKKARELSVLCSVEVGLVIFSAKGRLYEFCS 59 6899*********************************************96 PP
2	K-box	18.4	9.1e-08	119	195	15	92
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 ++ + e++ L+ ++ L+ + + +d+++L++ eL qLe++L+ l++ Rs K++ ++e+ +l + +l+ +++ PCP030812.1 119 KNHNSESSGLR-TNRVLKIFKSDMETQDIDNLDVPELTQLEKELDAVLRQTRSLKEKQMKEEKVRLENEIAALKLKEQ 195 55566666665.58899988999999*********************************9987766665555554444 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MGRGKVQLKP IADKIRRQVT FSKRRSGLIK KARELSVLCS VEVGLVIFSA KGRLYEFCSA 60 ERKKKDVVNS MKGEEQRKVS GYDICKVASV TNFEKLLERY QTHNDEEIAA SKTADGTDKN 120 HNSESSGLRT NRVLKIFKSD METQDIDNLD VPELTQLEKE LDAVLRQTRS LKEKQMKEEK 180 VRLENEIAAL KLKEQQSKDR AADEEADRQS TSAANNTTTT TNNSRSSDDY VPATILQLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	5e-30	MIKC_MADS family protein