PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP030888.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family NF-YA
Protein Properties Length: 329aa    MW: 36279 Da    PI: 7.902
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP030888.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.81.5e-32163219158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k+rkpylheSRh hAlrR+Rg+gGrF
  PCP030888.1 163 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKARKPYLHESRHLHALRRARGCGGRF 219
                  69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MMPAKSNEDP HIEHGAETVL QPIYSQPWWR GVGNGTASSM VDHSNSMVMN GAMQAQTSAR  60
LDGRANFNKE LRTTVESQSD GNSGSENQHT KSVSSSVVPA MGEHVDPNSQ MELVGHSIVM  120
SSYPYADPQY GGMLTPYGPQ TMLSPHFYGM HPGRMPLPPD MEEEPVYVNA KQYHGILRRR  180
QSRAKAELEK KLIKARKPYL HESRHLHALR RARGCGGRFL NTKKQDDNDE NSSLEKGMNL  240
DGNHSAESAK SGFESCPNTS NGNFDSSNVQ QDRSGQWLRT HSHHTHSNGN GPSSAYPSTF  300
GDSKESVFLG QQRENMQLNG SSRGAIPSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.26e-39NF-YA family protein