PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP030899.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family YABBY
Protein Properties Length: 231aa    MW: 25815.2 Da    PI: 8.1752
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP030899.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY242.86.9e-75191942170
        YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee........lleelkveeenlksnvekees 91 
                  ++ s ++q+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhC++llsvn++    ll+  ++ ++   ++        llee +++ +n+ +n++ + +
  PCP030899.1  19 HLLSPTDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCSNLLSVNMRAL--LLPPPNNNNQLHLPHpffstphnLLEEIRNTPSNTITNHQPNYT 114
                  567899****************************************776655..55555544455555567776666777777777776666666666 PP

        YABBY  92 astsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  +++ ++      ++++e+p++p  v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl
  PCP030899.1 115 NESAMPIRGGGFDHHQEIPKPPAvVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 194
                  666666666699********99989*****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MSSAATSSTV FNSPDQQQHL LSPTDQLCYV HCNFCDTVLA VSVPCSSLFK TVTVRCGHCS  60
NLLSVNMRAL LLPPPNNNNQ LHLPHPFFST PHNLLEEIRN TPSNTITNHQ PNYTNESAMP  120
IRGGGFDHHQ EIPKPPAVVN RPPEKRQRVP SAYNRFIKEE IQRIKAGNPD ISHREAFSAA  180
AKNWAHFPHI HFGLLPDQPV KKTNIRQQEG DDVLMKDGFF STPANVGVIP Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.15e-86YABBY family protein