PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP031026.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 242aa MW: 27889.9 Da PI: 4.5606

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP031026.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.5	1.3e-19	35	89	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +f++eq++ Le+ Fe+++ + +++ +LAk+lgL+ rqV++WFqN+Ra++k PCP031026.1 35 KNKKRFSDEQIRSLESIFESESRLEPRKKMQLAKELGLQPRQVSIWFQNKRARWK 89 67889*************************************************9 PP
2	HD-ZIP_I/II	118.8	3e-38	36	127	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+r+s+eq+++LE+ Fe+e++Lep++K++la+eLglqprqv +WFqn+RAR+k+kqlE++y+ L+++y++l+++ e+++ke+++L ++++ PCP031026.1 36 NKKRFSDEQIRSLESIFESESRLEPRKKMQLAKELGLQPRQVSIWFQNKRARWKSKQLEREYSILRANYNNLASKFEAMKKEKQALVVQVQK 127 79************************************************************************************999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MLDPIEYSSP SAEDHETFSC MSSPRAATTR RKNNKNKKRF SDEQIRSLES IFESESRLEP 60 RKKMQLAKEL GLQPRQVSIW FQNKRARWKS KQLEREYSIL RANYNNLASK FEAMKKEKQA 120 LVVQVQKLNN LMMQRENRGE DVAMNNGIDG ESDNGDAIIS ESDQVKLDFS VEKSEQGELG 180 VLSDDDSSIK PEYFGLEDES NLVNLVEYVD GSLTSAEDWG KLNSNGLFDE STGDYQWWDF 240 WS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	3e-63	HD-ZIP family protein