PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP031480.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family NF-YA
Protein Properties Length: 376aa    MW: 41181.3 Da    PI: 9.2011
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP031480.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.54e-32200256158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +k rkpylheSRh+hA+rR+Rg+gGrF
  PCP031480.1 200 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKVRKPYLHESRHQHAMRRARGTGGRF 256
                  69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    
MQPKSEAENR LHPRTIPPSS VYSEPWWQSV GYNPISPTGT GRNASNSSSL ECPNGRSESN  60
DDQSLSNDEA NKDDDDTAKD SHITSPRSAG NYRQDHHNVK HAGSSVPTVR DDCLVQPPQL  120
ELVGHSIACA SNPYQDPYYG GMMAAYGHPP LSFLPLRQTV FLEVREFGLK TTKKAIFCKG  180
YPPFLGMPPA RMPLPLEMAQ EPVYVNAKQY QGILRRRQAR AKAELERKLI KVRKPYLHES  240
RHQHAMRRAR GTGGRFAKKP NGDTSNSTGQ EKGTSSGPAH SSQSGSSSGS EPFPSDSAET  300
WNSPNSQREA RGSQVHDAYV AHNYANGSGC YQPHGGLQAS IYPSYSGKRG EEGDCTGQQR  360
GSISSNQASQ RRLAIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.15e-74NF-YA family protein