PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP031510.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 238aa    MW: 26090.2 Da    PI: 8.4873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP031510.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-054668123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H+++H
  PCP031510.1 46 YTCSFCKREFRSAQALGGHMNVH 68
                 9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MEKKGSGSNS LKDHAGIVTR AIRSSNTTYE EDDYNIDGFS WPPRSYTCSF CKREFRSAQA  60
LGGHMNVHRQ DRARLKGSPP RDSQYTSTIL NLNLNKVPNP NPNFSSTSSA SSPSSPSSWI  120
SPIRSTLPSL ISPPAPPPVF LVPSSENMKW VVGGTLFNHP LNFKASDFGT TVKKNAKSFC  180
GVGDRQCDGF IGEEHGCIRT VKAADHPHHP IVRLDLEIGM LGDSNKDDLD LELRLGYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.16e-23C2H2 family protein