PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP031532.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 210aa MW: 23621.8 Da PI: 8.0709

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP031532.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.1	1.1e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda++a+iifsstgkl+ey+s PCP031532.1 9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADIALIIFSSTGKLFEYAS 59 68***********************************************86 PP
2	K-box	41.6	5.2e-15	91	160	18	87
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 + ++++L kei +++R++ Ge+++ Lsl+eLq+Le+ Le +l + +kK+e ++++i++lq+ e PCP031532.1 91 NSNYSRLSKEIAAKSHQLRQMRGEEIQGLSLEELQRLEKSLEAGLGGVVEKKSEKIMKEINDLQRNVVEK 160 567999**********************************************************987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADIALIIFSS TGKLFEYASS 60 SMKEILERHN LHSKNLDKLE QPSLELQLVE NSNYSRLSKE IAAKSHQLRQ MRGEEIQGLS 120 LEELQRLEKS LEAGLGGVVE KKSEKIMKEI NDLQRNVVEK SNGRRLVHVD SENLITEEGQ 180 SSESVTNLCK SNSGPQDYDS SVTSLKLGCA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	3e-98	MIKC_MADS family protein