PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP031779.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 184aa    MW: 21355.3 Da    PI: 6.9657
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP031779.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF275.9e-091160351
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE.EEEEE-TTSEEEEEE- CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaev.aviifsstgklyeyss 51
                 i+ +  r  t+ kR++  + K +E+ +LC++ + avi+  s+ k+  ++s
  PCP031779.1 11 ISHEPSRRATLKKRKASFFRKLNEITTLCGVIAsAVIYNTSDTKVDVWPS 60
                 677778999*********************87626888888899988875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MAKNRSKHEL ISHEPSRRAT LKKRKASFFR KLNEITTLCG VIASAVIYNT SDTKVDVWPS  60
PQEAFYVLEK FKNLPEERQV KFMVDQESFL KNNISKLNRQ LERARFKNHE LDEKLLLIEY  120
LELEGKNFLD PGRLESLIGL DHQLDKRIDF ITKRIEFFEG VGRNQVDAGV DSDEMVGVVD  180
DNQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.21e-21M-type_MADS family protein