PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP031927.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 261aa MW: 29722.3 Da PI: 8.7332

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP031927.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.6	2.8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+d+++q+G g+W++ ++ g+ R++k+c++rw +yl PCP031927.1 14 KGAWSKEEDQRLIDYIRQHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	62	1.2e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia++++ gRt++++k++w++y PCP031927.1 67 RGNFTQEEDELIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTY 111 89******************.*****.**********99 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MGRAPCCEKS HTNKGAWSKE EDQRLIDYIR QHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TQEEDELIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT YVKRNLISRG 120 LDPQTHRPLN QATTATSTAP ASRLDLRNRP PPSSVVFDHK PINNHSKIEL LKHPKMEQEC 180 YNYNIESEAN CSTATGSGTT TEEDQQQQQQ KYECGDLNLD LSIGLEPFQS KPTRASSGNS 240 AESRLHQIIV PPNSNNNHQF F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	2e-85	MYB family protein