PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP032175.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29413.3 Da    PI: 9.7097
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP032175.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.21.4e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gkl+eys+
  PCP032175.1  9 KRIENKVNRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSTKGKLFEYST 59
                 79***********************************************96 PP
2K-box98.69.1e-33821748100
        K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  ++e++ + s++ e+akLk+++e Lqr+q h++GedL+ Lsl+eLq+LeqqL+++lk+iRs+Kn++++e+i+elqkk k+lqe+n+ L k+++e
  PCP032175.1  82 ANENESTGSWTLEHAKLKARVEVLQRNQSHYMGEDLQILSLQELQNLEQQLDSALKRIRSRKNQVMYESISELQKKDKALQEQNNLLAKNVKE 174
                  46788899********************************************************************************99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MGRGRVQLKR IENKVNRQVT FSKRRSGLLK KAHEISVLCD AEVALIIFST KGKLFEYSTD  60
SCMERILERY ERYSHAERQL LANENESTGS WTLEHAKLKA RVEVLQRNQS HYMGEDLQIL  120
SLQELQNLEQ QLDSALKRIR SRKNQVMYES ISELQKKDKA LQEQNNLLAK NVKEKEKAVA  180
PQAQLDHAQK QSLDFSSTLL PQALQSLNFS RSNYHQAIRS SDGISGVNQQ DGDETAIPHR  240
PHTLLPPWML RHLNE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-85MIKC_MADS family protein