PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP032202.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 156aa    MW: 18149.1 Da    PI: 10.1448
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP032202.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.32e-181150342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i ++  r+vtf kR+ng++KK +ELS+LC+++v+ i++s+
  PCP032202.1 11 IRDDVSRKVTFKKRKNGLMKKVKELSILCGIDVSAIVYSQ 50
                 88999*********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    
MTRKKIKLAY IRDDVSRKVT FKKRKNGLMK KVKELSILCG IDVSAIVYSQ YDTKPDVGSC  60
RDVARRIVTR FKQMPERDKS RNMLNQESFL RQQILKAEEQ LKKQIKENQE KEIMVQSMRG  120
SLPGDWLQNL SGTDLNGLLL SIEKNIEAIE EEMQEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKIKLAYIRDDVSRKVTFKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-29M-type_MADS family protein