PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP032215.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 192aa    MW: 22508.9 Da    PI: 9.5985
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP032215.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.86.9e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 +ri+n++n qvtfskRrng+ KKA+ELSvLCda+va+ii+ss+gklye++s
  PCP032215.1  9 ERIKNNINLQVTFSKRRNGLRKKAHELSVLCDAQVALIIYSSRGKLYEFCS 59
                 69***********************************************96 PP
2K-box83.93.5e-28761715100
        K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  s+ +++++++++ +qe+++Lk + e Lqr+qRhllGedL++L lkeL  Le+qL++ l+k ++ K++++++q+eel+kke++l  +nk+L+ +l+e
  PCP032215.1  76 SQDNVADNETQNIYQEVSRLKVKHEALQRSQRHLLGEDLQQLRLKELLVLEKQLDRTLSKAKQEKTRMMFNQLEELRKKENDLAGINKQLKCELQE 171
                  344499************************************************************************************998875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MGRGRVVMER IKNNINLQVT FSKRRNGLRK KAHELSVLCD AQVALIIYSS RGKLYEFCST  60
DMNKILEQYR QSCYSSQDNV ADNETQNIYQ EVSRLKVKHE ALQRSQRHLL GEDLQQLRLK  120
ELLVLEKQLD RTLSKAKQEK TRMMFNQLEE LRKKENDLAG INKQLKCELQ EVGPSNANYV  180
ACEEPTLRLH IW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.13e-50MIKC_MADS family protein