PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP032233.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 24898 Da    PI: 8.7659
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP032233.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.52.3e-25957149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ v ifss+gkl+e 
  PCP032233.1  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSSQGKLFEL 57
                 79********************************************996 PP
2K-box48.73.3e-1794189699
        K-box   6 gksleeakaeslqqelakLkkeienLq..reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  ++++ e+++   ++e++ +k+eie Lq     R +   + ++++l eLq Le++Le+ + ++Rs K+++l+++i+ l++ e  l  +nk+L+ k+e
  PCP032233.1  94 TEQTMETQTLDAKKEINLMKQEIEILQkgLRYRYMFDGGAGTMTLDELQVLEKHLETWIYHVRSAKMDILFQEIQLLRNSEGILAAANKYLQDKVE 189
                  4556778888999**************5534466777789****************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVFIFSS QGKLFELATK  60
GSQALSTFFC TIIISMQGLI ERYMKMKPTR APQTEQTMET QTLDAKKEIN LMKQEIEILQ  120
KGLRYRYMFD GGAGTMTLDE LQVLEKHLET WIYHVRSAKM DILFQEIQLL RNSEGILAAA  180
NKYLQDKVEV NTGANDFMPI ATDNTYPLTI PNDIYEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.14e-77MIKC_MADS family protein