PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP032327.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 812aa MW: 88387.1 Da PI: 4.8953

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP032327.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32	2.8e-10	762	811	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +rW+ E++ l +v+++G g+W++I + k Rt ++k++w++ + PCP032327.1 762 KRWSLLEEDTLRTGVQKYGEGSWSLILKSYSdifKERTQVDLKDKWRNMK 811 59*********************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence
MDPDVDVSRW VIELLLRDRE KDCIAKRLLA VAPFSDQDYR LKKTVLLRTI ECEVYEASVS 60 ETILETLEMI EDLDIREGID TTESMKAAYC SVATECTVKF LVGFMGKPSG KYLESVDRIW 120 RGRVGVLERS GRSQLVSAEL RHRMEEIEAG VWDLRVSKKL SSMNTRNDAL RSVSVYVKEA 180 LALLGPPFIT WAIRLNVPME VADLEADHIA VVNEVNVGGG SEFEGKMEKG ANARNGPELE 240 VQMANGANAG EGCSDLEAQM VNGAKGDGGS ELETQIANRA NVGGGGSEME AQLRDEANVG 300 PSGSELEAEV VRVTNVGGRS NMEVQMENGT GVGDKSELEE QMVNGTNVGH GFQLEEQTKN 360 GTNVAGHSEL EAQMVSRGRA NVVDGSEPEA QTGNGTNESD GSQRHAQTTN GSNVGSQSEL 420 EAQPVNGANV RDGCTYEGQM VNGANVSNGS ELGRILVAVP LKEVRAGSSL PTVSRGLVLN 480 DLVEIDSGFR NREVHRSADD QAPGQVNETG LAIPGRNGEL GLSIDHSTKD KENQRSTMPR 540 RKHLAHRRTR GPIRIRDAED LGTDVSDGKY GSLDTPEVNR AQEALKSSIS ELQELVTDPL 600 PDALRVSETV RSSLAMRSVS HVNGKDVGAE NPSIEKGAEP VQSNNDNVGN LPSRHQNDPQ 660 SSGIEKDVPN PAVDQGGTES VQTGAANLRS PSFSNQNNVA RPSLVERNST ARSFEWEESI 720 NTSQEGTKKD AGWLHLPSPK RTAVSPLKKH EDTRFSKRRK VKRWSLLEED TLRTGVQKYG 780 EGSWSLILKS YSDIFKERTQ VDLKDKWRNM KG

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence

MDPDVDVSRW VIELLLRDRE KDCIAKRLLA VAPFSDQDYR LKKTVLLRTI ECEVYEASVS  60
ETILETLEMI EDLDIREGID TTESMKAAYC SVATECTVKF LVGFMGKPSG KYLESVDRIW  120
RGRVGVLERS GRSQLVSAEL RHRMEEIEAG VWDLRVSKKL SSMNTRNDAL RSVSVYVKEA  180
LALLGPPFIT WAIRLNVPME VADLEADHIA VVNEVNVGGG SEFEGKMEKG ANARNGPELE  240
VQMANGANAG EGCSDLEAQM VNGAKGDGGS ELETQIANRA NVGGGGSEME AQLRDEANVG  300
PSGSELEAEV VRVTNVGGRS NMEVQMENGT GVGDKSELEE QMVNGTNVGH GFQLEEQTKN  360
GTNVAGHSEL EAQMVSRGRA NVVDGSEPEA QTGNGTNESD GSQRHAQTTN GSNVGSQSEL  420
EAQPVNGANV RDGCTYEGQM VNGANVSNGS ELGRILVAVP LKEVRAGSSL PTVSRGLVLN  480
DLVEIDSGFR NREVHRSADD QAPGQVNETG LAIPGRNGEL GLSIDHSTKD KENQRSTMPR  540
RKHLAHRRTR GPIRIRDAED LGTDVSDGKY GSLDTPEVNR AQEALKSSIS ELQELVTDPL  600
PDALRVSETV RSSLAMRSVS HVNGKDVGAE NPSIEKGAEP VQSNNDNVGN LPSRHQNDPQ  660
SSGIEKDVPN PAVDQGGTES VQTGAANLRS PSFSNQNNVA RPSLVERNST ARSFEWEESI  720
NTSQEGTKKD AGWLHLPSPK RTAVSPLKKH EDTRFSKRRK VKRWSLLEED TLRTGVQKYG  780
EGSWSLILKS YSDIFKERTQ VDLKDKWRNM KG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	1e-14	MYB_related family protein