PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP032556.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 454aa MW: 50987.9 Da PI: 4.9102

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP032556.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.3e-12	235	286	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ PCP032556.1 235 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 286 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MLFFCSDDFE TLQAFMPPSN FNNLDYTLDH HEEDQQMLKS RVDETNSSDN NNGMVNYLMY 60 NHHQLQQQQQ QQQQQQQIST QLAPAGFCGS TSTSFDKLSF ADVMQFADFG QKLALNQTKI 120 SEEEPAIDPV YFLKFPVLND KLDNNQDQSI SHMVPQAEER FTGLGEEDKT KSMEEEQDEE 180 GRVSGNNNSV QKLHFLGEEH QNNPRGGGVQ PEPAAAKNKR KRPRTTKTTQ EVESQRMTHI 240 AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRL 300 LGEAPPRQVG DSATAAAMAV QAAEGGGGPL IFPAANLSIN NPNDPIKFVD YETGLREETA 360 ENKSCFADVE VKVLGFDAMI KILSQRRPGQ LIKAIAALED LQLNILHTNI TTIEQTVLYS 420 FNVKVGSESR FTAEDIASSV QQIFSFIHAN TASM

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MLFFCSDDFE TLQAFMPPSN FNNLDYTLDH HEEDQQMLKS RVDETNSSDN NNGMVNYLMY  60
NHHQLQQQQQ QQQQQQQIST QLAPAGFCGS TSTSFDKLSF ADVMQFADFG QKLALNQTKI  120
SEEEPAIDPV YFLKFPVLND KLDNNQDQSI SHMVPQAEER FTGLGEEDKT KSMEEEQDEE  180
GRVSGNNNSV QKLHFLGEEH QNNPRGGGVQ PEPAAAKNKR KRPRTTKTTQ EVESQRMTHI  240
AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRL  300
LGEAPPRQVG DSATAAAMAV QAAEGGGGPL IFPAANLSIN NPNDPIKFVD YETGLREETA  360
ENKSCFADVE VKVLGFDAMI KILSQRRPGQ LIKAIAALED LQLNILHTNI TTIEQTVLYS  420
FNVKVGSESR FTAEDIASSV QQIFSFIHAN TASM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	247	RMTHIAVERNRR
2	296	300	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-124	bHLH family protein