PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP032825.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 226aa MW: 25449.9 Da PI: 8.9477

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP032825.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.9	9.9e-20	70	124	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F++n++++ +++e LA++l+L rqV vWFqNrRa+ k PCP032825.1 70 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSK 124 78889************************************************98 PP
2	HD-ZIP_I/II	119.1	2.4e-38	70	158	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+ PCP032825.1 70 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 158 69*************************************************************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence
MAVLPTAMGS SSLELTMSVP GFSSYPSFPN SSVRDLDINQ IPSLQGDQEE WMTAGMEDEE 60 ESSNGSGPPR KKLRLTKEQS RLLEESFRQN HTLNPKQKEA LAMQLKLRPR QVEVWFQNRR 120 ARSKLKQTEM ECEYLKRWFG SLTEQNRRLQ REVEELRAMK VSPPTVLYPH SCDPLPASTL 180 TMCPRCERVT TTTTPDRDRG GGPTKTNNIP ATAAPTLSTK VATPAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	127	RRARSKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	6e-79	HD-ZIP family protein