PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP032840.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 562aa MW: 60998.2 Da PI: 7.5716

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP032840.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.8	5.9e-11	45	71	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG+rC+++H++ PCP032840.1 45 PGVPNCVYYMRTGFCGYGGRCRYSHPR 71 5789*********************96 PP
2	zf-CCCH	39.8	7.6e-13	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tGtCk+G++CkF+H++ PCP032840.1 92 EPVCQYYLKTGTCKFGASCKFHHPK 116 789********************96 PP
3	zf-CCCH	33.5	7.2e-11	137	161	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C+++++tG+Ck+G +CkF+H+ PCP032840.1 137 GENECSYYLKTGQCKFGITCKFHHP 161 6789********************8 PP
4	zf-CCCH	35	2.4e-11	295	318	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++++tG CkyG++C+++H++ PCP032840.1 295 LECQYYLKTGDCKYGPSCRYHHPR 318 58********************96 PP
5	zf-CCCH	39	1.3e-12	338	364	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Crf++++G+Ck+G++CkF H++ PCP032840.1 338 PGEPPCRFYLQNGQCKFGSTCKFDHPM 364 5899*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MELYGRSPAR NGSNQEWSPA AGETGLEEQM WQLGLTSSES YPERPGVPNC VYYMRTGFCG 60 YGGRCRYSHP RDRAAVVATV RATGDYPERV GEPVCQYYLK TGTCKFGASC KFHHPKHGAG 120 SLNRAPLNIY GYPLRPGENE CSYYLKTGQC KFGITCKFHH PHPAGTTIPA SAPQFYPSVQ 180 SPVPLAEQYG GASTSLRVAR PPLLTGSYVQ GTYGPVLIPP GVVPIQGWSP YSAPLSPVPS 240 PGAQPTVGAT SLYGVTQLSS PTHGLASPYT SIPSSVGPSS SNPSEQVFPE RPGELECQYY 300 LKTGDCKYGP SCRYHHPRDR TVPGITCLLS PMGLPLRPGE PPCRFYLQNG QCKFGSTCKF 360 DHPMQTMRYN LSASSLVDMP VVQYPVGSLL ATLAPSSSSS NLRPDLLSSS GNTSSSSGGL 420 IFSQSGSVSL SDVQLSMITN VSLKVNFFSV RLTIGALFNI ARGIIERLGT LAFQEIGLIW 480 GVKDEVRKLK EIVAGFQAIL LDAEQKQASN NEVEVWLESI EDAVYEADGV LDEFNTEAQR 540 FFFYFIDGKY VVPIAFLSVF LV

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MELYGRSPAR NGSNQEWSPA AGETGLEEQM WQLGLTSSES YPERPGVPNC VYYMRTGFCG  60
YGGRCRYSHP RDRAAVVATV RATGDYPERV GEPVCQYYLK TGTCKFGASC KFHHPKHGAG  120
SLNRAPLNIY GYPLRPGENE CSYYLKTGQC KFGITCKFHH PHPAGTTIPA SAPQFYPSVQ  180
SPVPLAEQYG GASTSLRVAR PPLLTGSYVQ GTYGPVLIPP GVVPIQGWSP YSAPLSPVPS  240
PGAQPTVGAT SLYGVTQLSS PTHGLASPYT SIPSSVGPSS SNPSEQVFPE RPGELECQYY  300
LKTGDCKYGP SCRYHHPRDR TVPGITCLLS PMGLPLRPGE PPCRFYLQNG QCKFGSTCKF  360
DHPMQTMRYN LSASSLVDMP VVQYPVGSLL ATLAPSSSSS NLRPDLLSSS GNTSSSSGGL  420
IFSQSGSVSL SDVQLSMITN VSLKVNFFSV RLTIGALFNI ARGIIERLGT LAFQEIGLIW  480
GVKDEVRKLK EIVAGFQAIL LDAEQKQASN NEVEVWLESI EDAVYEADGV LDEFNTEAQR  540
FFFYFIDGKY VVPIAFLSVF LV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-175	C3H family protein