PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP033051.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 145aa    MW: 16183.1 Da    PI: 7.7924
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP033051.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.49.6e-2487135149
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
                  +Cqve+C++dls+ak+yhrrhkvC++hska+++lv  ++qrfCqqCsr 
  PCP033051.1  87 VCQVEDCKTDLSNAKDYHRRHKVCDMHSKATEALVGSVMQRFCQQCSRL 135
                  6**********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MGWPETPSDA GLSNSSSSGS DNISPGNEKD KRELEKRRRD VFVENRELND EAASLNLKLG  60
GQTYPIMEEV QTGKKTKTIG TTSNRAVCQV EDCKTDLSNA KDYHRRHKVC DMHSKATEAL  120
VGSVMQRFCQ QCSRLVPSYC YSLFG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13677KRRRDVFVENRELNDEAASLNLKLGGQTYPIMEEVQTGKKTK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.14e-23SBP family protein