PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP033132.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 231aa MW: 26662.7 Da PI: 6.686

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP033132.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.9	4.9e-20	34	86	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq+ Le+ Fe ++++ +++ +LA++lgL+ rqV +WFqNrRa++k PCP033132.1 34 TRRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWK 86 468*************************************************9 PP
2	HD-ZIP_I/II	124.2	6.1e-40	33	124	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 + rr+s+eq++lLE+ Fe+++kLep+rKv+lareLglqprqva+WFqnrRAR+k+kq+E+dy++L++ yd+l+++ e+L++e+++L +l++ PCP033132.1 33 NTRRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWKSKQIEQDYRSLREDYDKLASRFESLKEEKQSLIMQLQK 124 579************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MDRRKEECYE EENLDYGIEP QSAMKRKKNK SKNTRRFSDE QISLLESIFE ADSKLEPRRK 60 VQLARELGLQ PRQVAIWFQN RRARWKSKQI EQDYRSLRED YDKLASRFES LKEEKQSLIM 120 QLQKLHDLVG TSRAGAPTED SLANQTADGS SYKDGNCKTT ARVRLEEALE KTGAIDKHTS 180 NDVGGEFGDE RHELLNIGQL DASVTPLGLH GLDSGNILFD RCNSHWLNFW T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	36	KRKKNKSKNTRR
2	81	89	RRARWKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61890.1	1e-41	HD-ZIP family protein