PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP033159.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CO-like

Protein Properties

Length: 458aa MW: 50030.8 Da PI: 5.8943

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP033159.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.8	9e-08	47	80	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkgHt 38 C++++ +++++ C d ++ lC++C ++H++ + PCP033159.1 47 LCDKCNAQPAIIRCMDEKTSLCQSCDHWSHNNTS 80 6*****************************8844 PP
2	CCT	63.2	7.8e-22	402	445	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ PCP033159.1 402 RDKAKMRYKEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 445 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MEPLCEFCGM AMAVVYCKSD MARLCLYCDG CVHSANALSR RHPRFLLCDK CNAQPAIIRC 60 MDEKTSLCQS CDHWSHNNTS INGITTASAG GGMGGHRTHA LTCYTGCPSL SEFSRIWSVL 120 EGSSSGGNFE SSNWDQSLGS AVVATNQDQT NYISNNGLEG RDNNDRSFGV VVTAGTLNGG 180 SSLDQSCGRK FDTWIASSST LIPSNPNCTP HGKDQTPFLP QESSLPKGCT NFKDLAIQDS 240 NVLCDGLNVD DVPLTFENPD GIFCPQVPSR YQFEDRLDRE MDCLLMEKSL SVTESNGPNE 300 NAAQASSSGQ QERAAFQSSC GSDTVMPGMN GSANCLLMNP TCSRSINLGF PTVQQVHPSM 360 SLTLPSISRE SNPDYQDCEL STVFLTGEPW ESTLEASSPQ ARDKAKMRYK EKKKTRTFGK 420 QIRYASRKAR ADTRKRVKGR FVKAGEEYDY DPLVTTSF

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MEPLCEFCGM AMAVVYCKSD MARLCLYCDG CVHSANALSR RHPRFLLCDK CNAQPAIIRC  60
MDEKTSLCQS CDHWSHNNTS INGITTASAG GGMGGHRTHA LTCYTGCPSL SEFSRIWSVL  120
EGSSSGGNFE SSNWDQSLGS AVVATNQDQT NYISNNGLEG RDNNDRSFGV VVTAGTLNGG  180
SSLDQSCGRK FDTWIASSST LIPSNPNCTP HGKDQTPFLP QESSLPKGCT NFKDLAIQDS  240
NVLCDGLNVD DVPLTFENPD GIFCPQVPSR YQFEDRLDRE MDCLLMEKSL SVTESNGPNE  300
NAAQASSSGQ QERAAFQSSC GSDTVMPGMN GSANCLLMNP TCSRSINLGF PTVQQVHPSM  360
SLTLPSISRE SNPDYQDCEL STVFLTGEPW ESTLEASSPQ ARDKAKMRYK EKKKTRTFGK  420
QIRYASRKAR ADTRKRVKGR FVKAGEEYDY DPLVTTSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	8e-80	CO-like family protein