PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP033235.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 139aa    MW: 16077.9 Da    PI: 10.3906
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP033235.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.13e-151350542
                 SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 ++  r+ tf kR+ng++KK +ELS+LC+++ + i++s+
  PCP033235.1 13 DDASRKATFKKRKNGLMKKVKELSILCGIDSSAIVYSQ 50
                 567899******************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    
MARKKIKLAY LRDDASRKAT FKKRKNGLMK KVKELSILCG IDSSAIVYSQ YDIKPEVGPN  60
PDVTRRIIAR FKQMQEMDKR KNMMNQESIL RQQIVKVEEQ LKKLNKENQE KEIMIQSMYG  120
SLPADCLQNL SGTDLNGLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKIKLAYLRDDASRKATFKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-28M-type_MADS family protein