PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP033473.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 942aa MW: 102964 Da PI: 8.6139

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP033473.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.5	4.4e-38	749	850	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v+++l+lqqq+++l+aela++ PCP033473.1 749 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPLNRRHDAVVTITYEAQARLSDPVYGCVSTVLALQQQVASLQAELATV 846 7*********************9989*******************************************************************9 PP DUF260 98 keel 101 +++l PCP033473.1 847 QTQL 850 9885 PP

Sequence ? help Back to Top
Protein Sequence Length: 942 aa Download sequence
MAKRSLCSLP LVLAVIIFSV RDSEQHQSSE ALTLMRITQL LNFPTVSKSL NNYTDFCNIE 60 VNSSFAVSCY EGNITQLHII GEKPAPLLPR NFSIDSFVTT LVKLPSLKVL TLVSLGLWGN 120 LPGKITRLSS LEILNVTSNF LYGTIPPELS SLTSLQTLIL DDNMFSGLLP EGLGSLPVLS 180 VLSLKKNLFN SSLPSSLSEL ESLRLLGLSH NHFYGELPDF SRLTNLQVLE VGDNAFGPQF 240 PKLGKKLVTL VLRKNKFRSS IPAELSSYYQ LQCLDVSSNM FVGPFPPLLL SLPSITYLNF 300 SGNKFTGMLF ENSSCNAELK VVDLSSNLLT GSLPKCLESD SKNKVFLYAS NCLATSNQNQ 360 HPLPFCHNEA LAVGIVPDRS KRKQASKAAL ALGIIGALFG CVLFFGVIFF VYRRMNANKT 420 TKKSPTRSIT ENASSGYTSK LLSDARYISQ TMKSGALGLP GYRTFSLEEL EDATQNFDTS 480 TFMGEGSHGQ MYRGQLKDGS FVAIRCLKMK GSHSTENFMH HIELIMKLRH RHLVSALGHC 540 FECYLDDSSV SRIFLVFEYV PNGTLRSWIS GGHPRRSLAW TQRIAAAIGI AKGIQFLHTG 600 IMPGVFSNNL KITDILLDQN FVAKISSYKL PLLEENMEQI CSSSPGGHGV SSSRCVTSST 660 GARKKDDDRT DVHNFGVILL EMIKGRPVKS EAQIEVLEDQ PVQGDHGTSE GRRKGTSSRG 720 GGKRASMEAA VRTTTTTSNV VGSGSGAAPC GACKFLRRKC ISGCIFAPHF GSDQGAARFA 780 AVHKVFGASN VSKLLLHIPL NRRHDAVVTI TYEAQARLSD PVYGCVSTVL ALQQQVASLQ 840 AELATVQTQL INSRFAFANA LQITSQQQQQ NMALMLQPAY SNNTSTSTNL INMSSLTSNL 900 DIDAAPSSQS FVEPLQLSRP SQDDEDDEEE SRVPLLFANN RY

Sequence ? help Back to Top

Protein Sequence Length: 942 aa Download sequence

MAKRSLCSLP LVLAVIIFSV RDSEQHQSSE ALTLMRITQL LNFPTVSKSL NNYTDFCNIE  60
VNSSFAVSCY EGNITQLHII GEKPAPLLPR NFSIDSFVTT LVKLPSLKVL TLVSLGLWGN  120
LPGKITRLSS LEILNVTSNF LYGTIPPELS SLTSLQTLIL DDNMFSGLLP EGLGSLPVLS  180
VLSLKKNLFN SSLPSSLSEL ESLRLLGLSH NHFYGELPDF SRLTNLQVLE VGDNAFGPQF  240
PKLGKKLVTL VLRKNKFRSS IPAELSSYYQ LQCLDVSSNM FVGPFPPLLL SLPSITYLNF  300
SGNKFTGMLF ENSSCNAELK VVDLSSNLLT GSLPKCLESD SKNKVFLYAS NCLATSNQNQ  360
HPLPFCHNEA LAVGIVPDRS KRKQASKAAL ALGIIGALFG CVLFFGVIFF VYRRMNANKT  420
TKKSPTRSIT ENASSGYTSK LLSDARYISQ TMKSGALGLP GYRTFSLEEL EDATQNFDTS  480
TFMGEGSHGQ MYRGQLKDGS FVAIRCLKMK GSHSTENFMH HIELIMKLRH RHLVSALGHC  540
FECYLDDSSV SRIFLVFEYV PNGTLRSWIS GGHPRRSLAW TQRIAAAIGI AKGIQFLHTG  600
IMPGVFSNNL KITDILLDQN FVAKISSYKL PLLEENMEQI CSSSPGGHGV SSSRCVTSST  660
GARKKDDDRT DVHNFGVILL EMIKGRPVKS EAQIEVLEDQ PVQGDHGTSE GRRKGTSSRG  720
GGKRASMEAA VRTTTTTSNV VGSGSGAAPC GACKFLRRKC ISGCIFAPHF GSDQGAARFA  780
AVHKVFGASN VSKLLLHIPL NRRHDAVVTI TYEAQARLSD PVYGCVSTVL ALQQQVASLQ  840
AELATVQTQL INSRFAFANA LQITSQQQQQ NMALMLQPAY SNNTSTSTNL INMSSLTSNL  900
DIDAAPSSQS FVEPLQLSRP SQDDEDDEEE SRVPLLFANN RY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	2e-50	LBD family protein