PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP033683.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 210aa MW: 23324.6 Da PI: 9.6293

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP033683.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.2	6.9e-06	22	44	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PCP033683.1 22 FVCEICSKGFQRDQNLQLHRRGH 44 89*******************88 PP
2	zf-C2H2	17.4	1.2e-05	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s+ k H++t+ PCP033683.1 98 WQCERCSKKYAVQSDWKAHMKTC 120 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MPDPEADVIA LSPTTLLATN RFVCEICSKG FQRDQNLQLH RRGHNLPWKL KQRTSKEVRK 60 RVYVCPETSC VHHNPTRALG DLTGIKKHFC RKHGEKKWQC ERCSKKYAVQ SDWKAHMKTC 120 GTREYKCDCG TLFSRRDSFI THRAFCDALA EESAKAQTLM VGSDGSTNPS SNPTPSAKSA 180 VVASPPPPPH TPSNTVVSPA LSIQSSGNTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-107	C2H2 family protein