PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP034206.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARR-B

Protein Properties

Length: 1178aa MW: 131967 Da PI: 9.5237

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP034206.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	76.7	3e-24	210	263	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kp+++Wt+ LH++F+ a++++ G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+ PCP034206.1 210 KPKVVWTNSLHNQFLLAIRHI-GLDKAVPKRILEFMNVPGLTRENVASHLQKYRM 263 79*****************.******************************7 PP
2	Myb_DNA-binding	25.7	2.8e-08	213	262	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT ++ +++ a++ G + +k+I + m+ g+t++++ s++qky+ PCP034206.1 213 VVWTNSLHNQFLLAIRHIGLDkaVPKRILEFMNvPGLTRENVASHLQKYR 262 68***********************************************7 PP
3	DUF260	57.3	4.4e-18	729	777	3	51
DUF260 3 aaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpe 51 a Ck+lrr+C++dC+++pyfp ++p++fa vh+++Gasnv k+l+++++ PCP034206.1 729 ATCKYLRRRCPSDCIFSPYFPPNNPQRFASVHRIYGASNVAKMLQEMRP 777 78*******************************************9865 PP
4	Response_reg	78.2	2.8e-26	26	134	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 +l+vdD+ + + ++ +l+ y +v +++++ +al++l++++ +Dl+++D+ mp+mdG+el k+ r e klp+i+++a ++e+ +l+ l+ G PCP034206.1 26 ILVVDDDATTLAIVSAMLKTWSY-QVVAVKNPMDALAILRAQKgaFDLVVTDLHMPQMDGFELHKHVRDEF-KLPVIMMSADDNENVILKSLEGGFA 120 89*******************.9999*******888888********************99.********************* PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+ +Kp++++++ + PCP034206.1 121 DYMVKPVSKDDIKN 134 ********9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1178 aa Download sequence
MDATDSAEFR QSSSISKPSF VGMINILVVD DDATTLAIVS AMLKTWSYQV VAVKNPMDAL 60 AILRAQKGAF DLVVTDLHMP QMDGFELHKH VRDEFKLPVI MMSADDNENV ILKSLEGGFA 120 DYMVKPVSKD DIKNVWQYAE AAKKGKSVVI EEIEGAPREA PGEVDNGINS GMSSDTDEEQ 180 HEKKAEAKAK KSKKRNREGD NEERMVAPKK PKVVWTNSLH NQFLLAIRHI GLDKAVPKRI 240 LEFMNVPGLT RENVASHLQK YRMFLKRVAE KARLSKCLSE RVFRSSFAFS HPGPVFNSME 300 AGDQYSQYLK LQQQMGASPI NIASAFQPSS AGIDGNTINL LGSIQYPNYQ QSSCSSNTMG 360 SMPQLIGSGQ SRLLNHITQA NLLRHQPWLG NVNHQLISQA SRRPGVIGMQ QLMNNFGSSG 420 GMSSNAANTT GLTTNNIITN NLIQIFQQAR QHGIFTNNNP FSYNFGTPGI QNNVTNQQLI 480 GFSGTQMMNP NGRSELLGIL NNFNGTGGFS SNGFNFNNET INGLTNRVRN VSLSGTTPPM 540 ATLGGSSSLS PSAGIGISTT TSSAYQFQKD FSNNREDQQQ NVSVLPPPAE NTDDNSTTTP 600 TLVNKNNLSP GQEMDKALDD LMISNLFVDQ QNNYQPPPSS QQQGGDQDQL PPDFSSFLYP 660 VEVPDATPNQ MNPAVADQGL DTAVNKVSDP SPDQQQGGDQ QVLNPEFSGN VFESEDYNML 720 FQTALPFPAT CKYLRRRCPS DCIFSPYFPP NNPQRFASVH RIYGASNVAK MLQEMRPIFC 780 GNFEYDARQN ELERLFGRYG KVDRVDMKSG FAFIYMEDER DAEYAIRGLD RKEFGRKGRR 840 LRVEWTKQER GTRRSGASRR SSTNTRPSKT LFVINFDPYH TRTKDLERHF DSYGKIVSVR 900 IRRNFAFVQY ESQEDATRAL EATNMSKLMD RVISVEYAVR DDDERSDGFS PDQRSRDRSP 960 DRGRDRRRSP SPYKRERGSP DYGRGPSPGP YQRERGSPDY GRVTSPYRRE RVSPDYGRGR 1020 SPSPYRRDRS DHGRVSSRSP RKERVSTDRV RDRSRSRSPY GREKLEVDNG HGPSRSPYKR 1080 ERGSPENGPR RGPYKRERDS PEIGRLPSSS PYKRERASPE NGRGPSGSPY ERERTSLENG 1140 RVASPNSPPE ARDSPNYGGP ESPMNERYSS RSPQAEEE

Sequence ? help Back to Top

Protein Sequence Length: 1178 aa Download sequence

MDATDSAEFR QSSSISKPSF VGMINILVVD DDATTLAIVS AMLKTWSYQV VAVKNPMDAL  60
AILRAQKGAF DLVVTDLHMP QMDGFELHKH VRDEFKLPVI MMSADDNENV ILKSLEGGFA  120
DYMVKPVSKD DIKNVWQYAE AAKKGKSVVI EEIEGAPREA PGEVDNGINS GMSSDTDEEQ  180
HEKKAEAKAK KSKKRNREGD NEERMVAPKK PKVVWTNSLH NQFLLAIRHI GLDKAVPKRI  240
LEFMNVPGLT RENVASHLQK YRMFLKRVAE KARLSKCLSE RVFRSSFAFS HPGPVFNSME  300
AGDQYSQYLK LQQQMGASPI NIASAFQPSS AGIDGNTINL LGSIQYPNYQ QSSCSSNTMG  360
SMPQLIGSGQ SRLLNHITQA NLLRHQPWLG NVNHQLISQA SRRPGVIGMQ QLMNNFGSSG  420
GMSSNAANTT GLTTNNIITN NLIQIFQQAR QHGIFTNNNP FSYNFGTPGI QNNVTNQQLI  480
GFSGTQMMNP NGRSELLGIL NNFNGTGGFS SNGFNFNNET INGLTNRVRN VSLSGTTPPM  540
ATLGGSSSLS PSAGIGISTT TSSAYQFQKD FSNNREDQQQ NVSVLPPPAE NTDDNSTTTP  600
TLVNKNNLSP GQEMDKALDD LMISNLFVDQ QNNYQPPPSS QQQGGDQDQL PPDFSSFLYP  660
VEVPDATPNQ MNPAVADQGL DTAVNKVSDP SPDQQQGGDQ QVLNPEFSGN VFESEDYNML  720
FQTALPFPAT CKYLRRRCPS DCIFSPYFPP NNPQRFASVH RIYGASNVAK MLQEMRPIFC  780
GNFEYDARQN ELERLFGRYG KVDRVDMKSG FAFIYMEDER DAEYAIRGLD RKEFGRKGRR  840
LRVEWTKQER GTRRSGASRR SSTNTRPSKT LFVINFDPYH TRTKDLERHF DSYGKIVSVR  900
IRRNFAFVQY ESQEDATRAL EATNMSKLMD RVISVEYAVR DDDERSDGFS PDQRSRDRSP  960
DRGRDRRRSP SPYKRERGSP DYGRGPSPGP YQRERGSPDY GRVTSPYRRE RVSPDYGRGR  1020
SPSPYRRDRS DHGRVSSRSP RKERVSTDRV RDRSRSRSPY GREKLEVDNG HGPSRSPYKR  1080
ERGSPENGPR RGPYKRERDS PEIGRLPSSS PYKRERASPE NGRGPSGSPY ERERTSLENG  1140
RVASPNSPPE ARDSPNYGGP ESPMNERYSS RSPQAEEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	2e-61	ARR-B family protein