PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP034617.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 108aa    MW: 12752.8 Da    PI: 10.4887
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP034617.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.82.5e-071349743
                 HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 s r++ f kR+  +lKK  EL   C +++ vi  +++
  PCP034617.1 13 SDRTIMFRKRKRRLLKKVRELTNVCCVNAVVIFRGPH 49
                 679999**************************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    
MFRKKVKVAW VESDRTIMFR KRKRRLLKKV RELTNVCCVN AVVIFRGPHD NKPTMWHSGQ  60
VTEQSRKLIE HFEPDLDLPT RSFSPHEGED EEKMMSKIGG FKNDMHGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKVAWVESDRTIMFRKRKRR
22025RKRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.12e-08M-type_MADS family protein