PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP034714.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 127aa    MW: 14151.1 Da    PI: 10.482
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP034714.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.91.5e-2480123851
                  HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF   8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                   rqvtfskRr gi+KKA ELS+LC+ evaviifs+tgkl+++ss
  PCP034714.1  80 ARQVTFSKRRRGIFKKAGELSILCESEVAVIIFSQTGKLFDFSS 123
                  59****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    
MDSSERSSLR EIGEGLTDRE XDLSFLEQPA APTLSLSPQS SPLSKIAPKI SSSDLKPLNE  60
GGRKKEKMKI KIRKIDYLPA RQVTFSKRRR GIFKKAGELS ILCESEVAVI IFSQTGKLFD  120
FSSSRTL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.14e-23MIKC_MADS family protein