PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP035113.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 462aa MW: 50278.3 Da PI: 8.2633

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP035113.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.4	9e-12	76	102	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H++ PCP035113.1 76 PGEPDCIYYLRTGLCGYGSNCRFNHPK 102 5789*********************96 PP
2	zf-CCCH	38.5	2e-12	120	144	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++CkF+H++ PCP035113.1 120 QPDCGYFLKTGTCKYGSTCKFHHPR 144 789********************96 PP
3	zf-CCCH	38	2.7e-12	167	189	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G+ CkF+H++ PCP035113.1 167 SCPYYMRTGSCKFGPACKFHHPQ 189 6********************97 PP
4	zf-CCCH	36.1	1.1e-11	305	330	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG Ck++H++ PCP035113.1 305 DQPECRYFMSTGTCKYGIDCKYHHPK 330 689*********************96 PP
5	zf-CCCH	35.4	1.8e-11	347	373	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++ +G+CkyG++C+F H++ PCP035113.1 347 PGQPVCSYYLMYGICKYGPTCRFDHPF 373 5789*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MTLVGEAEKK SRGKQHKGQV HANSVLPPMP DARQAQKNAV PSQSDGNVEE AFWRLTINDN 60 QERGGVAQAN SYPDRPGEPD CIYYLRTGLC GYGSNCRFNH PKYASQGNQY NGELPERVGQ 120 PDCGYFLKTG TCKYGSTCKF HHPRDRRGAG PVLFNVLGLP MHQEEKSCPY YMRTGSCKFG 180 PACKFHHPQP QSLGTVLPAF GSAGSTVVPS SGVPYVGGLS TWSIPRVPYI SGPRLQTPQS 240 YMPVVLPPQG IVPAHGWNTY VGNLSPVSST GILGSNLTYN SSTWGESASN GQVHLSSPSL 300 PQRPDQPECR YFMSTGTCKY GIDCKYHHPK ERIAESATTP LGLPSRPGQP VCSYYLMYGI 360 CKYGPTCRFD HPFMEQSASY NFGMQALPML DSSLISYPRG WSVAHGLETS PSIPSKLTDG 420 AKKPASNRYE NSDTKISEDS PEQVGSMSPS PTSSEPVQDQ SG

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MTLVGEAEKK SRGKQHKGQV HANSVLPPMP DARQAQKNAV PSQSDGNVEE AFWRLTINDN  60
QERGGVAQAN SYPDRPGEPD CIYYLRTGLC GYGSNCRFNH PKYASQGNQY NGELPERVGQ  120
PDCGYFLKTG TCKYGSTCKF HHPRDRRGAG PVLFNVLGLP MHQEEKSCPY YMRTGSCKFG  180
PACKFHHPQP QSLGTVLPAF GSAGSTVVPS SGVPYVGGLS TWSIPRVPYI SGPRLQTPQS  240
YMPVVLPPQG IVPAHGWNTY VGNLSPVSST GILGSNLTYN SSTWGESASN GQVHLSSPSL  300
PQRPDQPECR YFMSTGTCKY GIDCKYHHPK ERIAESATTP LGLPSRPGQP VCSYYLMYGI  360
CKYGPTCRFD HPFMEQSASY NFGMQALPML DSSLISYPRG WSVAHGLETS PSIPSKLTDG  420
AKKPASNRYE NSDTKISEDS PEQVGSMSPS PTSSEPVQDQ SG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-110	C3H family protein