PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP035296.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 406aa MW: 44601.6 Da PI: 7.8619

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP035296.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.1	4.1e-10	91	115	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ PCP035296.1 91 FKTKLCCKFRA-GTCPYVTNCNFAHS 115 69*******.***********8 PP
2	zf-CCCH	43.3	6.2e-14	224	249	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg PCP035296.1 224 WKTRICNKWELTGYCPFGSKCHFAHG 249 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MDYGRESNAV QVITGNSGGD IWSGDQAVWA TEDEYRVWNN GDAMADTMSN SSYDQRQSQS 60 RSGSEPPNKK SRNSQDATSS NRSKAIGKMF FKTKLCCKFR AGTCPYVTNC NFAHSIEELR 120 RPPPNWQDIV AAHEEEKAVS SEPREEYQIP IVSTGFGVET PRSYKGRHCK KFYTEEGCSY 180 GDNCTFLHDE QSKNRESVAI SLGPGGYGGA AAAVNGANNK PSNWKTRICN KWELTGYCPF 240 GSKCHFAHGV AELAVLLGLP YILVSVSLHG CLMFSISAVV LFLVLRRNCV LSSKSNPHSQ 300 FIVALQGAEW GWTXLHRYGG GLVEGETRDS SSVAPDNKQG AMPSKTPGDA VVVSVPLVSH 360 SDVYHLGVPS QRSSIVIQRS GPRAHQKWKG PDKISRIYGD WIDDIE

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MDYGRESNAV QVITGNSGGD IWSGDQAVWA TEDEYRVWNN GDAMADTMSN SSYDQRQSQS  60
RSGSEPPNKK SRNSQDATSS NRSKAIGKMF FKTKLCCKFR AGTCPYVTNC NFAHSIEELR  120
RPPPNWQDIV AAHEEEKAVS SEPREEYQIP IVSTGFGVET PRSYKGRHCK KFYTEEGCSY  180
GDNCTFLHDE QSKNRESVAI SLGPGGYGGA AAAVNGANNK PSNWKTRICN KWELTGYCPF  240
GSKCHFAHGV AELAVLLGLP YILVSVSLHG CLMFSISAVV LFLVLRRNCV LSSKSNPHSQ  300
FIVALQGAEW GWTXLHRYGG GLVEGETRDS SSVAPDNKQG AMPSKTPGDA VVVSVPLVSH  360
SDVYHLGVPS QRSSIVIQRS GPRAHQKWKG PDKISRIYGD WIDDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	2e-87	C3H family protein