PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP035580.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 200aa MW: 23471.7 Da PI: 9.9874

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP035580.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	7.7e-16	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll + ++ +G g W+ ++ + g++R++k+c++rw++yl PCP035580.1 13 KGAWTREEDDLLRQSIEIHGEGKWHQVPYRAGLNRCRKSCRLRWLNYL 60 79********************************************97 PP
2	Myb_DNA-binding	51	3.4e-16	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T++E +l+++++k+lG++ W++Ia +++ gRt++++k++w++ PCP035580.1 66 RGDFTEDEVDLIIRLHKLLGNR-WSLIAGRLP-GRTGNDVKNYWNT 109 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence
MEGYNVNLSV MRKGAWTREE DDLLRQSIEI HGEGKWHQVP YRAGLNRCRK SCRLRWLNYL 60 KPNIKRGDFT EDEVDLIIRL HKLLGNRWSL IAGRLPGRTG NDVKNYWNTR LRINSRMKTV 120 QNKSQETRKT IVIRPQPRSF IKSSNYLSSK EPIIDHIQSE EDLSTSSQMS SLTNDGNDWW 180 KTLLEDEDIL LKELHVPVLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	3e-60	MYB family protein