PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP035969.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 434aa MW: 48813.7 Da PI: 6.2691

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP035969.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.3	6.8e-14	207	258	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A++++k+L+ PCP035969.1 207 QRMTHIAVERNRRRQMNDHLNVLRSLMPTS---YIQRGDQASIVGGAIDFVKELE 258 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MERLLQGPIN PCQFFGEHLD FPFEQSLNFT TESLRFEEEE ESHNHHLSLP SLDDRMPFLQ 60 MLQSVDSSTT TTTPYFPLKE PSFQALLKLQ HFKKPWELDK NYMPEMETPI QKALELESCV 120 THEMVELQHS PVKSEGKDSH LHHSISECNQ GEEKPSSVAG SPPPPTWIQV QNGAEKTQQP 180 KFTPATRERR KRKRTRPTKN KEEVESQRMT HIAVERNRRR QMNDHLNVLR SLMPTSYIQR 240 GDQASIVGGA IDFVKELEQL LHSLEAQKRM RKAADQIQGM SNNGDNNSSF SSSSASSSSP 300 CSMAMPSNGM FMTLSQCRIG SHDQESTTAT AAPGTFDDEG TAQNKSEAAD IDVTVIQSHV 360 NLKVKCQRRA GQLMKAIVAL EDRRLTVLHL NITSSQDTVL YSFNLEIEEG CNLGSADEIA 420 KAVHQIFSFI NGSS

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MERLLQGPIN PCQFFGEHLD FPFEQSLNFT TESLRFEEEE ESHNHHLSLP SLDDRMPFLQ  60
MLQSVDSSTT TTTPYFPLKE PSFQALLKLQ HFKKPWELDK NYMPEMETPI QKALELESCV  120
THEMVELQHS PVKSEGKDSH LHHSISECNQ GEEKPSSVAG SPPPPTWIQV QNGAEKTQQP  180
KFTPATRERR KRKRTRPTKN KEEVESQRMT HIAVERNRRR QMNDHLNVLR SLMPTSYIQR  240
GDQASIVGGA IDFVKELEQL LHSLEAQKRM RKAADQIQGM SNNGDNNSSF SSSSASSSSP  300
CSMAMPSNGM FMTLSQCRIG SHDQESTTAT AAPGTFDDEG TAQNKSEAAD IDVTVIQSHV  360
NLKVKCQRRA GQLMKAIVAL EDRRLTVLHL NITSSQDTVL YSFNLEIEEG CNLGSADEIA  420
KAVHQIFSFI NGSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	194	RRKRKR
2	208	219	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	1e-73	bHLH family protein