PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP036200.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CO-like

Protein Properties

Length: 928aa MW: 101092 Da PI: 5.3074

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP036200.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.1	1.3e-06	12	43	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 C+ ++++++ l+C+ ++ lC C ++ H+ PCP036200.1 12 VPCDFCSDQPAVLYCRADSAKLCLFCDQHVHS 43 57***************************995 PP
2	zf-B_box	21	6.9e-07	54	99	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ ++ ++ C +++ lC++C H + H+++pl PCP036200.1 54 SQICDNCASEAVSVRCSTDNLVLCQECDWDAHGScsvtaaHDRTPL 99 689*************************999954888888888775 PP
3	CCT	63.4	6.9e-22	439	482	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++ PCP036200.1 439 RGNAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAT 482 7789*************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 928 aa Download sequence
MVNPKSGGVE GVPCDFCSDQ PAVLYCRADS AKLCLFCDQH VHSANLLSRK HVRSQICDNC 60 ASEAVSVRCS TDNLVLCQEC DWDAHGSCSV TAAHDRTPLE GFSGCPSALE LASLLGLDLQ 120 DKSLLARPDP QLQNWDMGLP SMDSSWNGFG MQDLMVPIQN GVVDLTGDMK RQNSGGISGK 180 QKQGIQKQLL DLLKRDLDGS GDGRGGGGGG SENLVPGTQT RNGWQEENGN GNGDVEELAS 240 IDVRNEKGGV GGVAARAASL ETVLQQQTPF STLLKMPEEN RDGDMLWDSN PHGQNTQIWD 300 FNLGRLRDHE ESGPLEVTYG SNVSGFMIKD FSELMKEPSL TDTKMLRDIY QMNCPVRQDD 360 TKFNITSNNP AGSLGPATSE SNNIPIGQPS SGSVFGNDKG SGASNDINFM EQSFLMRGDG 420 ISMRTLGTKA DMELLAQNRG NAMLRYKEKK KTRRYDKHIR YESRKARADT RKRVKGRFVK 480 ATTEAPDVVA IASVDCNSER DALNVWKHSL VDPNNALQSW NSTLPSPCTW DLGDNNLSGI 540 LVPELGILAN LEXEVYGNNL FGSIPEEIGN LKKLVSLDLY QNNLTGTIPT SLGQLSSLRF 600 MRFYNNRLTG SISPSLGNLT SLQILELNSN LLTGTVPVGV INLVQSGTYL DLGKLDYGSG 660 ITVPEPGNFA LFTIQVKKNT FYIVNILDEL KEKTILLRQK KLPLNXSGVA AFESQVKNSS 720 VAIASVECNS EGDALSVWKS SLVDPNNVLQ SWDPTLVNPC TWFHVTCNSE NSVTRVDLGD 780 ANLSGLIVPE LGILANLQYL EVFANNLFGS IPKEIGNLTK LVSLDLYRNN LTGTIPTSLG 840 HLPSLRFMRV FSNSLTGAIP RSLGKLKSLQ ILELNSNLLT GTIPAELLYL VRFGNLNLFN 900 VSDNLLQGTV HRTNSTVTTI IQDPQARK

Sequence ? help Back to Top

Protein Sequence Length: 928 aa Download sequence

MVNPKSGGVE GVPCDFCSDQ PAVLYCRADS AKLCLFCDQH VHSANLLSRK HVRSQICDNC  60
ASEAVSVRCS TDNLVLCQEC DWDAHGSCSV TAAHDRTPLE GFSGCPSALE LASLLGLDLQ  120
DKSLLARPDP QLQNWDMGLP SMDSSWNGFG MQDLMVPIQN GVVDLTGDMK RQNSGGISGK  180
QKQGIQKQLL DLLKRDLDGS GDGRGGGGGG SENLVPGTQT RNGWQEENGN GNGDVEELAS  240
IDVRNEKGGV GGVAARAASL ETVLQQQTPF STLLKMPEEN RDGDMLWDSN PHGQNTQIWD  300
FNLGRLRDHE ESGPLEVTYG SNVSGFMIKD FSELMKEPSL TDTKMLRDIY QMNCPVRQDD  360
TKFNITSNNP AGSLGPATSE SNNIPIGQPS SGSVFGNDKG SGASNDINFM EQSFLMRGDG  420
ISMRTLGTKA DMELLAQNRG NAMLRYKEKK KTRRYDKHIR YESRKARADT RKRVKGRFVK  480
ATTEAPDVVA IASVDCNSER DALNVWKHSL VDPNNALQSW NSTLPSPCTW DLGDNNLSGI  540
LVPELGILAN LEXEVYGNNL FGSIPEEIGN LKKLVSLDLY QNNLTGTIPT SLGQLSSLRF  600
MRFYNNRLTG SISPSLGNLT SLQILELNSN LLTGTVPVGV INLVQSGTYL DLGKLDYGSG  660
ITVPEPGNFA LFTIQVKKNT FYIVNILDEL KEKTILLRQK KLPLNXSGVA AFESQVKNSS  720
VAIASVECNS EGDALSVWKS SLVDPNNVLQ SWDPTLVNPC TWFHVTCNSE NSVTRVDLGD  780
ANLSGLIVPE LGILANLQYL EVFANNLFGS IPKEIGNLTK LVSLDLYRNN LTGTIPTSLG  840
HLPSLRFMRV FSNSLTGAIP RSLGKLKSLQ ILELNSNLLT GTIPAELLYL VRFGNLNLFN  900
VSDNLLQGTV HRTNSTVTTI IQDPQARK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	2e-50	CO-like family protein