PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP036288.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 231aa MW: 26869.2 Da PI: 7.651

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP036288.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.4	2.8e-19	72	125	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle Le+ F ++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k PCP036288.1 72 KKKRLTSDQLESLERSFLEEIKLDPDRKMKLSSELGLQPRQIAVWFQNRRARWK 125 56679************************************************9 PP
2	HD-ZIP_I/II	117.6	7e-38	72	161	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kk+rl+++q+++LE+sF ee kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yd +++e+e+L++ev +L++ l PCP036288.1 72 KKKRLTSDQLESLERSFLEEIKLDPDRKMKLSSELGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEYDVVSKEKEKLQEEVMKLKTIL 161 9**************9999***************************************************************9766 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MDWNTNLRHL VSRPEPSFGF LYNYNSYDHY PPGLEMKHQA MISETSSHGG LVPGMMDRNN 60 HQSSYGCSSQ DKKKRLTSDQ LESLERSFLE EIKLDPDRKM KLSSELGLQP RQIAVWFQNR 120 RARWKAKQLE RLYDALKQEY DVVSKEKEKL QEEVMKLKTI LRDEVARKQV SIGYTEISGE 180 ETVESTSVSI RSANKARGTN QHQIAECNYL YNVEEYNPVS PPFWGNLPSY P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	101	KKKRLTSDQLESLERSFLEEIKLDPDRKMK
2	120	128	RRARWKAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	4e-50	HD-ZIP family protein