PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP036689.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 172aa    MW: 20167.7 Da    PI: 5.161
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP036689.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.85.9e-13956148
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                 k+i nk   + t+skRr+g+  KA  LS L++ ++a+i+fs+  +l+ 
  PCP036689.1  9 KKITNKNYLKATYSKRRKGLCGKATDLSRLTGCQIAIIVFSPGSRLFL 56
                 679999999*********************************988875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MGRVKIEIKK ITNKNYLKAT YSKRRKGLCG KATDLSRLTG CQIAIIVFSP GSRLFLFGHP  60
SAETVIDRFL AQQAPCTDND HEDESFESIH GVDDREDLEN NQEEYKQEED EMNDAKVNFW  120
WDELVGEQLE LHELIQYKTL LNKLRENVAR KLQDMNRREL CTIDFFLERT HT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-24M-type_MADS family protein