PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP037154.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 257aa MW: 27658.4 Da PI: 8.9617

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP037154.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.7	7.2e-42	64	164	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kf +vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdPvyG++gvi++lqqq+++l+ael++++ PCP037154.1 64 PCAACKLLRRRCAEECPFSPYFSPHEPQKFSAVHKVFGASNVSKMLLEVAENQRADAANSLVYEANLRLRDPVYGCMGVISALQQQIQSLQAELNAVR 161 7***********************************************************************************************99 PP DUF260 99 eel 101 +++ PCP037154.1 162 TQI 164 875 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MSIGREITTF DEIGKKIRRE SDASVVEMGI MSTTRISSSS SSSFGVPHQG MTMMSTTTLN 60 TITPCAACKL LRRRCAEECP FSPYFSPHEP QKFSAVHKVF GASNVSKMLL EVAENQRADA 120 ANSLVYEANL RLRDPVYGCM GVISALQQQI QSLQAELNAV RTQILRHKFK EATSPSIVSP 180 RGIIHHAALV SNSGMVSYAA QPQAISPLPP PQLPSVSAPS SVVFSSSSSS SASSLYNPST 240 NTTGYSSISS KNVPYFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	3e-60	LBD family protein