PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP037398.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 88aa    MW: 10104.8 Da    PI: 10.513
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP037398.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.85e-32959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRrng+lKKA+ELSvLCdaev +i+fs++gklye++s
  PCP037398.1  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSTRGKLYEFAS 59
                 79***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVGLIVFST RGKLYEFASA  60
GYSLSLSLKF KKDWFFAHFM DYVVMGGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.13e-35MIKC_MADS family protein