PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP038145.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 25389.2 Da    PI: 11.0135
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP038145.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.5e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gk y ++s
  PCP038145.1  9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPSGKSYQFAS 59
                 79**********************************************986 PP
2K-box65.32.2e-22851741099
        K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                   ++++e++++e + L+k i +L+  +R+l Ge+L++L ++eL+qLe+qL++++++iRsk  +++ e+++ l++k k+ qeen++L k+++
  PCP038145.1  85 RARTMEYWRNENEELRKSIGKLEMRLRNLAGEELSTLGVQELKQLERQLKTGVERIRSKMRRIISENVSLLKRKHKASQEENTRLLKRIK 174
                  46679********************************************************************************99885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP SGKSYQFASH  60
DITRTISMYK REVGLPESNN SSFGRARTME YWRNENEELR KSIGKLEMRL RNLAGEELST  120
LGVQELKQLE RQLKTGVERI RSKMRRIISE NVSLLKRKHK ASQEENTRLL KRIKLHELNF  180
ADATCSTSSV GANARISAFP SRGSTESSGC LIPILPRAHL GSRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.24e-48MIKC_MADS family protein