PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP038289.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 545aa MW: 58422.1 Da PI: 4.8652

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP038289.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.7e-09	361	409	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq PCP038289.1 361 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 409 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MDLGDQDKFE LENRNDDPMN FSPGVTPDWR FGGSNLTTTS MGLVPTGNCL AVGSSSRSSA 60 SMAESFNPTL WDHPTSSQEL GFCDMNVQNS ASTSDSIGIR KGIPVSLRSG IDRALDMSWN 120 PPNSMLKGEI FLPNGPGVLP QSLSQFPADS AFIERAARFS CFNGGNVSDM VNHFGVPETM 180 SMYSRDGGMM PWTQELVAGN GSKGVSGVQS QRTELNGDVS FPLEQGTTEG SPLKNEKKSQ 240 SLAKSRDEAK HAIGGSGNES DEADYSSGVG AGQEEASMLE GAEPSSKGSK KRKRSGQANE 300 LDQANAQPPC ESAMDTTEFQ KKGEQQPAST PNKTGKQGSQ ASDPPKEDYI HVRARRGQAT 360 NSHSLAERVR REKISERMKF LQDLVPGCSK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA 420 TVNPRLDFDI EGLLAKDILL SRVGPSSTLG FSPDMPVAYP QLHPSQPGLI QAGLCGMGSS 480 SDLLRRAMGS QMTPIAGGFK EPSQLPNVWE DELHNVVQMS YGAGTPPSSQ DVDGSAPPGQ 540 MKVEL

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MDLGDQDKFE LENRNDDPMN FSPGVTPDWR FGGSNLTTTS MGLVPTGNCL AVGSSSRSSA  60
SMAESFNPTL WDHPTSSQEL GFCDMNVQNS ASTSDSIGIR KGIPVSLRSG IDRALDMSWN  120
PPNSMLKGEI FLPNGPGVLP QSLSQFPADS AFIERAARFS CFNGGNVSDM VNHFGVPETM  180
SMYSRDGGMM PWTQELVAGN GSKGVSGVQS QRTELNGDVS FPLEQGTTEG SPLKNEKKSQ  240
SLAKSRDEAK HAIGGSGNES DEADYSSGVG AGQEEASMLE GAEPSSKGSK KRKRSGQANE  300
LDQANAQPPC ESAMDTTEFQ KKGEQQPAST PNKTGKQGSQ ASDPPKEDYI HVRARRGQAT  360
NSHSLAERVR REKISERMKF LQDLVPGCSK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA  420
TVNPRLDFDI EGLLAKDILL SRVGPSSTLG FSPDMPVAYP QLHPSQPGLI QAGLCGMGSS  480
SDLLRRAMGS QMTPIAGGFK EPSQLPNVWE DELHNVVQMS YGAGTPPSSQ DVDGSAPPGQ  540
MKVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	290	295	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.1	1e-123	bHLH family protein