PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP038361.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 220aa    MW: 24594.7 Da    PI: 4.7133
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP038361.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.41.2e-3871071100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+++Cv+apyf+ +q + +fa+vhk+FGasnv+k+l +lp ++r+da+ ++ yeA ar++dPvyG+v+ i++lqqq++ l++e+++l
  PCP038361.1   7 SCGACKFLRRKCTSECVFAPYFCYDQaADHFAAVHKVFGASNVSKMLLHLPVQNRSDAAITMSYEALARMHDPVYGCVSQIFALQQQVAYLQEEIETL 104
                  6************************9789*******************************************************************99 PP

       DUF260  98 kee 100
                  +++
  PCP038361.1 105 GNQ 107
                  887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MTGLGFSCGA CKFLRRKCTS ECVFAPYFCY DQAADHFAAV HKVFGASNVS KMLLHLPVQN  60
RSDAAITMSY EALARMHDPV YGCVSQIFAL QQQVAYLQEE IETLGNQMVN FATCHPSNSS  120
NTFTDQLQVL SQNGAVDTQH IQNQLPELPI FPHIGNAAAN QGFNSEMDIE MPPVHEWEEV  180
KLFSDHSTPD PLKRFLEGME QDMLGNNAWS NELLQGIYIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-56LBD family protein