PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP038375.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26325.6 Da    PI: 9.7328
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP038375.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.91.7e-203078149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 kr+e+k +r+vtfskR+ g++ KA ELSvL++ae a i++ss+gk++ +
  PCP038375.1 30 KRVEDKNKRHVTFSKRKRGLFNKAAELSVLTGAETAAIVVSSNGKVFCF 78
                 799******************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MAKSPDNKIT DIGTTNGKKE SKGRRRVEIK RVEDKNKRHV TFSKRKRGLF NKAAELSVLT  60
GAETAAIVVS SNGKVFCFGS PSPDTVIERY LSDNTFLLPA GQSDNHLQNN NIHHSSNKKQ  120
IEDYVEASRR LKEAKVLKGG KKNNSNNNGG DGGCSYGWWE RPIGMMTSLE ELEEYRDALY  180
KLKHNVEVRT NQMIRETSPS THFSPLLFMD DIWNSPELSH GQGFMAPEFN FFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-23M-type_MADS family protein