PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP038468.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 221aa MW: 25215.3 Da PI: 10.1611

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP038468.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	65.9	7.2e-21	29	76	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G ++WktIa++ g++R++k+c++rw++yl PCP038468.1 29 KGAWTAEEDQKLAEVIEIHGAKRWKTIASKAGLNRCGKSCRLRWLNYL 76 79********************************************97 PP
2	Myb_DNA-binding	52.9	8.3e-17	82	127	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E++l+v+++k+lG++ W++Ia +++ gRt++++k++w+++l PCP038468.1 82 RGNISEQEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 127 7899****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence
MAPVTKDSIN RRKVKGGEAM KNTKREVNKG AWTAEEDQKL AEVIEIHGAK RWKTIASKAG 60 LNRCGKSCRL RWLNYLRPNI KRGNISEQEE DLIVRLHKLL GNRWSLIAGR LPGRTDNEIK 120 NYWNSHLSKR MNQKEKQNGA NLTRQMISID HQKDRVQMKE DLSSEEGATS TSTTSAASKG 180 GDQNSNINID VDDFFDFSNE GPLNLEWVSK FLGQDDGRWF N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	2e-55	MYB family protein