PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP038702.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 508aa MW: 55309.7 Da PI: 6.4319

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP038702.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.4	4e-16	321	367	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq PCP038702.1 321 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 367 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MNGCVPDFEM DDDYSLPTSS ALNRPRKSTM PEDDVMELLW QNGQVVMQSQ NQRSAVNSKK 60 SHQSKHDVVL PDDGGGITRP ASLPQPPAQN PHLFMQEDEM ASWLQYPLVD DPFSADLLYP 120 DSTTSELRQP QVSAPAPSSR LPIHMPRRTE VQNFLHFGRP NNNNASSNRP MIPEMAPSSS 180 KKSVVRETMT VVDSSDTPLV GPSSRALDSR PDGAGGGLAN GATPFPTAGT SFPAKEVTTC 240 EMSLTSSPGG SSESASASAE PMSAQKPPPT ADNRKRKGRE VAAAADDAEI QCEDVEFESA 300 NGKKQVRGST SSTKRSRAAE VHNLSERRRR DRINEKMKAL QELIPRCNKS DKASMLDEAI 360 EYLKSLQLQV QMVSMGCGMV PMMFPGVQQM MSMPMGMGIG MGMGMGMGME MASINRPMMP 420 FPNVIAGSPM PTAAAHMGPR FPIPPFHMQP IPASDPARVP AVNQTDHMIN SLGAQNPNQS 480 RMPNFADPYQ QFFGPQQMQL PLQQQVKL

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MNGCVPDFEM DDDYSLPTSS ALNRPRKSTM PEDDVMELLW QNGQVVMQSQ NQRSAVNSKK  60
SHQSKHDVVL PDDGGGITRP ASLPQPPAQN PHLFMQEDEM ASWLQYPLVD DPFSADLLYP  120
DSTTSELRQP QVSAPAPSSR LPIHMPRRTE VQNFLHFGRP NNNNASSNRP MIPEMAPSSS  180
KKSVVRETMT VVDSSDTPLV GPSSRALDSR PDGAGGGLAN GATPFPTAGT SFPAKEVTTC  240
EMSLTSSPGG SSESASASAE PMSAQKPPPT ADNRKRKGRE VAAAADDAEI QCEDVEFESA  300
NGKKQVRGST SSTKRSRAAE VHNLSERRRR DRINEKMKAL QELIPRCNKS DKASMLDEAI  360
EYLKSLQLQV QMVSMGCGMV PMMFPGVQQM MSMPMGMGIG MGMGMGMGME MASINRPMMP  420
FPNVIAGSPM PTAAAHMGPR FPIPPFHMQP IPASDPARVP AVNQTDHMIN SLGAQNPNQS  480
RMPNFADPYQ QFFGPQQMQL PLQQQVKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	326	331	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	3e-79	bHLH family protein