PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP038979.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 236aa MW: 27482.6 Da PI: 5.193

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP038979.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.8	2.5e-13	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEde+l v++ G+++W++ a++ g++R++ +c+ rw++yl PCP038979.1 15 KGLWLEEEDERLTTFVNLKGNRRWDALAKESGLRRSGRSCRMRWLNYL 62 678*******************************************97 PP
2	Myb_DNA-binding	39.2	1.6e-12	75	113	8	48
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 E++ ++++++++G++ W++Iar ++ gRt++++k+ w+++l PCP038979.1 75 EEKTILQLHQRWGNK-WSKIARALP-GRTDNEIKNDWRTHL 113 99***********.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MMACQAAMDG EKLHKGLWLE EEDERLTTFV NLKGNRRWDA LAKESGLRRS GRSCRMRWLN 60 YLRPNVKHGQ ITIIEEKTIL QLHQRWGNKW SKIARALPGR TDNEIKNDWR THLKKKTQIP 120 DGNFQCTLNK NGRGLFCQEG DMNNEKYDFD QDHDSVKNSW ETKVTISDDL GLSDFAVTNS 180 PYETQLSDWI SELSSEQNGT VYNQDCNSVE SDLCHLTWTP DDSDTWDCPS FLWDMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	5e-54	MYB family protein