PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP039300.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 240aa    MW: 27803.6 Da    PI: 9.5401
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP039300.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.26.8e-26127212186
     trihelix   1 rWtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW++ ev+aLi+ r   ++++r +g  k+  Wee+s km+e g+ rs  +C+ekwen+nk+++++  +++kr + + + cpyf++le
  PCP039300.1 127 RWPEAEVQALITQRAAFKHKFRvAGTPKGRIWEEISVKMHEMGYVRSGRKCREKWENINKYFRRCMGSDNKR-PANAKLCPYFHELE 212
                  8*********************558999******************************************98.88889*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MEQKEQMHKQ LIEMVEKKEE ERLAREEAWK QQELDRLKRD KEIRAQETSS NLALISFIQN  60
YLGYEIQVPQ PSAATAPERA PAPTAAPIPI SVVPKYDHQR VEGNGKADNG MQRDLMLVSH  120
SDATDRRWPE AEVQALITQR AAFKHKFRVA GTPKGRIWEE ISVKMHEMGY VRSGRKCREK  180
WENINKYFRR CMGSDNKRPA NAKLCPYFHE LELLHKSALV SFGNGFNRTS NQNEANIEKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.17e-35Trihelix family protein