PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP039814.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 616aa MW: 67921.3 Da PI: 6.4561

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP039814.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.5e-16	91	135	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I ++g ++t+ q++s+ qk+ PCP039814.1 91 RERWTEEEHKKFLEALKLYGRA-WRRIEDHVG-TKTAVQIRSHAQKF 135 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence
MSIFLLYECG EDKDKVLLWF LQAEGVRRNG VVSRRVEEED EFGSTGSDGV VSASNGISMS 60 AGGVQLKDDQ FSSGNDFTPK VRKPYTITKQ RERWTEEEHK KFLEALKLYG RAWRRIEDHV 120 GTKTAVQIRS HAQKFFSKVV RDPNGGNTAS EEPIDIPPPR PKRKPMRPYP RKLVHPLNKE 180 TSTVEQSAMS TSPNLSVLEQ ENQSPKSVLS VIGSDAMGST DSSTPSDGLS PDSSAAGVNS 240 GNLIPSEPNP SLEESGSTIN NCSLPNKQLK MKLELFPTDD VDASGGSAEE VSARTLKLFG 300 RTVLVTDSHR PSSRAAGDSK SLPSDVQEEK PVQTSLPCNH TDMESASGSV EHVWDNFPYG 360 RHQGIYFMQF QNQNSNVVES GTNAYPVPWW NICPPFIPFH MQQQPVNEDV DSKKVEREGS 420 CTGSDAGTAS DDEIRDKEVE TQGDRHVSDK EREPNSVLQF KVSANSAFSV LRASTGQYRK 480 GFVPYKRCVA ERDAKSSTMA SEDRDGKRVR LSFXIKCRKE GGIRFTIDGS NIFISVLISN 540 VAGAGDIVAV KVKGSRTGWL PMGRNWGQNW HVSADLLNQP LSFEVTSSDG RTVTSYNVAP 600 KAWNFGQTFE GKQFES

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence

MSIFLLYECG EDKDKVLLWF LQAEGVRRNG VVSRRVEEED EFGSTGSDGV VSASNGISMS  60
AGGVQLKDDQ FSSGNDFTPK VRKPYTITKQ RERWTEEEHK KFLEALKLYG RAWRRIEDHV  120
GTKTAVQIRS HAQKFFSKVV RDPNGGNTAS EEPIDIPPPR PKRKPMRPYP RKLVHPLNKE  180
TSTVEQSAMS TSPNLSVLEQ ENQSPKSVLS VIGSDAMGST DSSTPSDGLS PDSSAAGVNS  240
GNLIPSEPNP SLEESGSTIN NCSLPNKQLK MKLELFPTDD VDASGGSAEE VSARTLKLFG  300
RTVLVTDSHR PSSRAAGDSK SLPSDVQEEK PVQTSLPCNH TDMESASGSV EHVWDNFPYG  360
RHQGIYFMQF QNQNSNVVES GTNAYPVPWW NICPPFIPFH MQQQPVNEDV DSKKVEREGS  420
CTGSDAGTAS DDEIRDKEVE TQGDRHVSDK EREPNSVLQF KVSANSAFSV LRASTGQYRK  480
GFVPYKRCVA ERDAKSSTMA SEDRDGKRVR LSFXIKCRKE GGIRFTIDGS NIFISVLISN  540
VAGAGDIVAV KVKGSRTGWL PMGRNWGQNW HVSADLLNQP LSFEVTSSDG RTVTSYNVAP  600
KAWNFGQTFE GKQFES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	6e-64	MYB_related family protein